Overall, the GCN controller is best. The left analog stick is better positioned, and of course it's your only option if you want to play GCN games on the Wii (classic is not supported for this). On the other hand, the Classic Controller's layout is much better suited for pre-N64 VC games.
The Vc Controller because when I was playing super mario world, I used the GC Controller and the normal jump button (B) was right next to the run button (Y), it made it hard to do a run and jump.
I have only used the classic controller for Super Mario World. I use the Gamecube for the other games Mario Kart 64, Zelda OOT, Mario 64 and Zelda ALTTP.
Personally i absolutely hate the GC controller. its my least favorite controller of all time. so i actually really like the VC controller. it is reminicent of the SNES controller, its balanced, the buttons are semetrical, its sleek, and it feels better.
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