Well first I'd check with the mobo manual to actually see if RAID is enabled (if not, then nothing will really happen :P), then all you have to do, is at the point where Windows asks what Drive you want to install to, take out the Vista install disk, and put in the mobo drivers disk.
Then browse to the drive and select the correct folder, like if you were directing Windows to a folder for a normal manual driver install. It'll come up with a list of drivers found (and here's the tricky part) you have to select the correct RAID driver, and then hopefully your drives will appear.
Now this probably isn't the best explaination, but hopefully it puts you on the right track.
Also, this may not be the source of your problem, but trying never hurt anyone :).
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