yes you beat the game. If you stole the male doctors pen(forgot his name) you can acess his computer and learn some information through his emails. You can also use eagle vision around the lab to see various symbols that know one knows what they mean
I was confused about that as well when I beat it. Turns out you have eagle vision now in the modern world which the game only vaguely hints at when you briefly see the pentagram on the floor. So walk around using eagle vision to see all sorts of weird stuff (including two messages on the floor) then go into your room and use eagle vision on the wall behind your bed to see all the crap you've been seeing in your dreams on it and the credits. After the credits are done you'll get a 50g achievement ("Saw the Future") and have access to the animus so you can go back and get 100% completion. Also, if you haven't checked out the conference room's computer or Vidic's computer yet you can do that now to get some backstory.
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