Secret Area

Once you complete the game by defeating the final boss, wait until the credits roll and the title screen appears. There should be a star next to 'continue'. When you continue the game, it will continue from the spot where you last saved as usual, but you will now be allowed access to the Secret Area, which is located in the Ura-Internet square. You can only get there by pluuging into the computer under the hot springs. You will need 100 standard chip entries in your library to enter.

Contributed by: WhiteDragon_Nal 

Secret Boss

After you complete the Secret Area by defeating Serenade, put at least 300 BugFrags in the Trader, then leave the internet. When your return to the Bug Trader, Forte will appear, fused with Gospel, and attack you. If you defeat him, you will get the Forte chip.

Contributed by: WhiteDragon_Nal 

11th chip trick

This trick will allow you to use the 2nd chip in your folder at any point in battle. First, you need Custom Style to fully level up, then get another Custom Style and begin leveling it up. You need enough Custom+ NaviCust programs to total Custom+5. Install said NaviCust parts. Now, in battle, load up any chip, then hover the cursor over the 10th chip and press right. The picture will show an ''11th'' chip. Now, there are two ways to go from here. If the 11th chip can normally be selected with the chip you've currently got selected, you can select it now and the chip in your first slot will become the second chip in your folder (the second chip in the list when viewing the full contents of your folder). If the 11th chip does NOT match, you can also deselect the selected chip(s) and select the 11th chip. Instead of getting the 11th chip in battle, you will get the 2nd chip in your folder! Really useful with the 2nd chip being a ProtomanV5 chip, etc.

Contributed by: netPikatron 

300000 Easy Zenny

First do the job "Legendary Tomes". Once you have the tomes don't go back to the Navi, instead go to the teachers lounge. Look at the back shelf and examine the strange orange statue. Theres a code in the statue that matches with the tomes and the data is 300000 zenny.

Contributed by: AablMind 

Chip Duplication

In 2-player versus, the game can be fooled into copying wagered chip data, allowing players to duplicate chips. This glitch works in both versions.

First, start up the game and begin a Real match, in which the winner gets a chip from the loser's pack. Once the battle is over and the Battle Result screen appears, the winner must press A once to reveal the chip he just won. Once the chip is revealed, the loser must turn off his game without pressing any buttons. This will let the loser keep his otherwise lost chip while still putting it in the winner's chip pack, duplicating the chip.

Make certain that the loser is the one to turn off his game; if the winner turns off his game, the winner will not keep the chip while the loser still loses it, destroying the chip.

Contributed by: Altimadark 

EX Codes for Navi Cust

If you have the ModTools and there are no Errors in the NaviCust, extra codes can be entered to give MegaMan a power boost. To enter these, press the 'Select' button after 'Running' the NaviCust program and then enter the code.
Note: 1 = first strange symbol, 2 = second strange symbol, 3 = third strange symbol.

Contributed by: RandyPandy 

Secret Bosses

After you beat Alpha, secret bosses will be available to you.

Contributed by: Emperor-Justinian-I 

Shrink Navi Customizer Programs

In the Navi Customizer Screen, move the highlight over the name of the program that you want to shrink (and has not been shrunk yet). Hold the 'Select' button, and key in the corresponding code.

NOTE: 1,2, and 3 stand for the 3 weird characters, the first of which is 1, second is 2, and third is 3.

Contributed by: ShadoCatz, alexis508, BountyHunterSAx 

Obtaining the 20 Giga-CLass Chips

For most of these Giga-Class chips, you'll need to have traded and unlocked the SP mode.

Contributed by: MastermindChaud 

7 Stars

There are 7 stars you can get, which will appear next to the main title screen once you satisfy the objectives.

Contributed by: GeoffMendicino 

Error Codes

If you attempt to use a Program of a color your current style does not support,you will get an error and be unable to boot up MegaMan until the problem is fixed.
You can bypass these errors once you have purchased the ModTools at Beach Street.When the error number appears,press Select and input the code to counter.

Contributed by: RandyPandy, electrosho, ShadoCatz 

Variable Sword Codes

When having the VarSword chip in battle hold down A button and enter these codes quickly.

Contributed by: Darkchivaro 

SP navis

Contributed by: WhiteDragon_Nal 

Numberman passwords

In Higby's shop, you'll see Numberman who'll give you chips and other goodies if you enter the right passwords.

Contributed by: strawhat 

Secret Boss: Bass

After you complete the Secret Area by defeating Serenade, use the 10-bug bug Trader 30 times, trading in a total of 300 bugs. Then leave the secret area, (leave the internet and go back in). When your return to the Bug Trader, Bass will appear, fused with Gospel, and attack you. If you defeat him, you will get the Bass chip.

Contributed by: Mojobaby817 

Secret Boss:Serenade

To Unlock the Secret Boss of the Secret Area Net, You need to gather all 200 standard chips. Then the Door of Honor will open, and you will be allowed to fight Serenade.

Contributed by: SHunterX 

Walk Through Navi

In Secret Area 2, near a warp point where the Time Trial Navi is standing facing diagonally down to the left, you can go into the corner behind him. If you press down at the right spot, you should walk through him.

Contributed by: jackwinklebean 

11th Chip Trick

This trick will allow you to use the 2nd chip in your folder at any point in battle. First, you need Custom Style to fully level up, then get another Custom Style and begin leveling it up. You need enough Custom+ NaviCust programs to total Custom+5. Install said NaviCust parts. Now, in battle, load up any chip, then hover the cursor over the 10th chip and press right. The picture will show an ''11th'' chip. Now, there are two ways to go from here. If the 11th chip can normally be selected with the chip you've currently got selected, you can select it now and the chip in your first slot will become the second chip in your folder (the second chip in the list when viewing the full contents of your folder). If the 11th chip does NOT match, you can also deselect the selected chip(s) and select the 11th chip. Instead of getting the 11th chip in battle, you will get the 2nd chip in your folder! Really useful with the 2nd chip being a ProtomanV5 chip, etc.

Contributed by: netPikatron 

300,000 Zenny

After obtaining all three Tomes in the "Legendary Tomes" job, don't head back to the Ghost Navi just yet. Instead, go to the strange-looking statue in the teacher's lounge at ACDC school. Examine the statue to find 300,000 Zenny.

Contributed by: RandyPandy 

Chip Duplication

In 2-player versus, the game can be fooled into copying wagered chip data, allowing players to duplicate chips. This glitch works in both versions.

First, start up the game and begin a Real match, in which the winner gets a chip from the loser's pack. Once the battle is over and the Battle Result screen appears, the winner must press A once to reveal the chip he just won. Once the chip is revealed, the loser must turn off his game without pressing any buttons. This will let the loser keep his otherwise lost chip while still putting it in the winner's chip pack, duplicating the chip.

Make certain that the loser is the one to turn off his game; if the winner turns off his game, the winner will not keep the chip while the loser still loses it, destroying the chip.

Contributed by: Altimadark 

Shrink Navi Customizer Programs

In the Navi Customizer Screen, move the highlight over the name of the program that you want to shrink (and has not been shrunk yet). Hold the 'Select' button, and key in the corresponding code.<p />NOTE: 1,2, and 3 stand for the 3 weird characters, the first of which is 1, second is 2, and third is 3.

Contributed by: BountyHunterSAx, ShadoCatz, Natedabous 

EX Codes

These codes can be entered after you buy the Mod Tools on Beach St. In the Navi Customizer, press select after loading your programs. This allows you to input codes. (Note: 1,2, and 3 correspond to the symbols.)

Contributed by: RandyPandy, MGRaiden, SirOcelot 

Secret Bosses

After you beat Alpha, secret bosses will be available to you.

Contributed by: Emperor-Justinian-I 

Obtaining Giga-Level Battle Chips

To obtain a good number of these battle chips, you will need to use the Omega Navis Code. The ones that need this code to be active will be marked (SP).

Contributed by: AlexisOceana 

7 Stars

There are 7 stars you can get, which will appear next to the main title screen once you satisfy the objectives.

Contributed by: GeoffMendicino 

Error Codes

If you attempt to use a Program of a color your current style does not support,you will get an error and be unable to boot up MegaMan until the problem is fixed.

You can bypass these errors once you have purchased the ModTools at Beach Street.When the error number appears,press Select and input the code to counter.

Contributed by: RandyPandy, electrosho, ShadoCatz 

VarSword Combo!

When using the VarSwords, hold down the A button and enter the following quickly before the VarSword attacks and the VarSword's attack range will change to the following effect.

Contributed by: Yababa, megavolnutt99 

Codes

Contributed by: CaptainRoyFalcn 

Numberman passwords

Numberman passwords
In Higby's shop, you'll see Numberman who'll give you chips and other goodies if you enter the right passwords.

Contributed by: strawhat