I own all 4 so heres my take:

Storyline-

1. Majoras Mask-a very interesting plot
2. Twilight Princess-a long story but as interesting as Majoras Mask
3. Ocarina of Time-the first Legend of Zelda that really put it out there so not as good a story line
4. Wind Waker-the story line was a drop from all the others

Action-

1. Ocarina of Time-enough fighting but not too much that you get annoyed about
2. Twilight Princess-a little too much fighting for me but only a little
3. Majoras Mask-not too much but the storyline made it that way so its alright...lots of running
4. Wind Waker-not enough and too much sailing

Puzzle Solving-

1. Ocarina of Time-pretty much all dungeons so lots of it
2. Majoras Mask-the storyline of it was basically set up to do this but not enough dungeons to fulfill
3. Wind Waker-the changing winds is what im talking about here and there was enough
4. Twilight Princess-in dungeons you just ran around

Length-

1. Twilight Princess
2. Ocarina of Time
3. Wind Waker
4. Majoras Mask

Side Stories-

1. Wind Waker-lots of little things you could do such as help people out or little games
2. Majoras Mask-also could help people out but not as much as in Wind Waker
3. Ocarina of Time-more little things than Twilight Princess
4. Twilight Princess-three games that stood out that you could do...no side quests whatsoever

Graphics-

1. Twilight Princess-very nice artistry
2. Majoras Mask-nice graphics for N64 a little better than Ocarina of Time
3. Ocarina of Time-not much worse than Majoras Mask
4. Wind Waker-never appealed to the cell-shading type of graphics but appealing to some people

Impact To Me-

1. Ocarina of Time-really was amazing for me, best game RPG game iv ever played, maybe the best game ever
2. Majoras Mask-really was a different take on Legend on Zelda than any other one made yet
3. Twilight Princess-fun gameand took another approach to Legend of Zelda because of its animal changing/other realm
4. Wind Waker-after Majoras Mask and Ocarina of Time i thought this would be great especially on gamecube.I was wrong

Overall-

1. Ocarina of Time
2. Majoras Mask
3. Twilight Princess
4. Wind Waker