Axl was in deep sleep like Zero,but was helping another resistance.He finds Zero and Kraft in the level where you fight Deastants Mantisk,He wakes up due to another resistance.(You use Axl for the intro level)At the end of the level the boss you fight is Kraft.Axl fights Kraft until half of his health is gone.Then you here Zero's voice...Zero stops the battle and Axl says what the heck Zero it's you!Axl tells Zero that he was helping out a small resistance that was all of a sudden wipped out from a exploision caused by Omega.(the part when Omega used a rocket to fing the dark elf)Axl finds one of his friends and trys to help him but he says that is too late! the guy Rick(reploid) tells Axl that he was a friend of Zero's and tells him that before Axl was sent to deep sleep that Zero told Rick to find him 100 years in the future and tell Axl that his mission is to find Zero and X to fight an Evil that can't be stopped.
Axl is happy to see Zero and joins Zero and Kraft on there mission to find this new evil and destroy it.Then it continues with the three wondering Neo Arcadia looking for something.Axl asks Zero where is X?Zero tells Axl what had happen to X and that Zero is there to change things around.Axl begins to wonder if he would ever meet X again.Kraft spots the destroyed chamber where X's body used to be,Zero tries to find a piece of X's armor.(Ceil found a way to resurrect a reploid using a piece of there armor to be reincarnated)Zero looses hope when they had serched for over 2days.Ceil gives Zero a call saying that there is a mysterious energy roaming around the old resistance base.Zero,Axl,and Kraft are transfered back to the Base,Zero tells Ceil everything about Axl and that he will tag along with them.Kraft then gets a little jelous and leaves the room,Ceil ask Zero to go to the area where the mysterious energy is at.Axl tells Zero that he will go to help out,but Zero attends to go on the mission alone.Zero leaves to accomplish his mission.Ceil then asked Axl if he wants to help then he must help Ceil with a mission of hers.She tells Axl that there has been siting of humans near a area in the forest,and ask him to help them before they are spotted by someone else.Axl then telaports to the area(this is where you start playing)at the end of the level Kraft comes out of nowhere and ask Axl to telaport the lost humans to the base.Axl knew there was something wrong and didn't want to go with the humans back to the base so only telaported them instead.Kraft tries to ditch Axl but it was no use they ended up finding a very powerful energy.It was a reploid named Ice created by Dr.Weil.Ice ask where did the humans go that where suppose to be dead by now?Kraft says why do you want to know?Ice says because my mission is to eliminate all humans.Thats when Kraft tries to fight off Ice but Ice hit him from behind and Kraft was knocked out.Axl gets made and tells Ice that his time has come and he will destroy him after what he did to Kraft.(you fight Ice,he is as strong as Omega Zero)
Once you defeat Ice Axl says you won't be able to hurt anyone anymore then Kraft comes and blows him away with his gun.Axl and Kraft are then telaported back to the base,the humans where happy and thanked them both.A resistance solider then takes the humans to assign them to a room for resting.Axl,Kraft,and Ceil then wait until Zero's return.So she assigns Axl and Kraft Missons(this is where you start any of the 4 mission's that are given to you,you also get to choose who will do the mission Axl or Kraft for now)I haven't made up any bosses to continue this part,but after defeating all four bosses,alarms go off in the base.Ceil tells Axl and Kraft that there is a transmission coming threw,it was Zero!Axl tells Ceil to put Zero through.Zero:I'm in the area where the energy was coming from,it appears to be a reploid with a sword...Axl:Do you want us to help you out?Zero:No!...stay there I can take care of this.Kraft:Zero who is the reploid?Zero:It's a reploid with black armor he is.....Ceil:Zero!Zero your breaking out!Zero:It's no use he is going to....Ceil says transmission was cut off!Axl and Kraft don't wanna stay around doing nothing so they go to the area where Zero was sent to.(this is another mission where you play to get to the end)
After you get to the end of the level,there will be Zero, and the black armored reploid...
The black armored reploid was Colonel,he was there for one reason, to wipe out everything in his path.Colonel and Zero fight until Kraft and Axl show up.Kraft says:Zero don't worry where here to fight beside you.Axl then says:Yah lets take this reploid out, it will be easy!Zero:Stay back guys I'll do this on my own,this guy is too powerful for you guys to even scratch him.Colonel:Hahahaa My name is Colonel and I'm here for your destruction!Colonel then swings his sword to try and hit Zero,but Zero seems to be to fast for Colonel to catch.Colonel gets mad and charges up his sword,Colonel:Zero your time is now good bye forever!Colonel teleports behind Zero but out of nowhere Kraft gets involved with the fight and tells Zero to take a break that he'll take it from here.He then brings out his gun and blast Colonel to the ground.Kraft,Zero and Axl thought it was over.But as soon as Kraft turns way Colonel slashed him in two.Zero then trys to fight off Colonel so Axl can save Kraft, Axl runs toward Kraft and says Don't worry buddy you'll be fine! Axl then transfers Kraft back to the base.Axl then wants to fight Colonel but he says The time has come for this planet,I will make sure every living thing suffers!He then transfers out of action.Zero: Don't worry we haven't seen the last of him!Axl what do you think we should do now?Zero:Well we better get back to base and make sure Kraft is ok!Axl Alright lets go, Ceil Transfer us!But when they got back to base something had happened!!
When Axl & Zero return to the base,the alarms go off like crazy,and theres no one to be found.Axl & Zero search the base looking for Ceil and the resistance.Kraft is found by Axl,he was still badly damaged,and needed to be fixed right away.Axl stays to help out Kraft while Zero goes outside the base to look for the others.He finally finds Ceil and the resistance but they weren't alone.Harpuia,Fenir, and Leviathan where taking the Regeneration System,Harpuia says:Sorry Zero but we need this system for whats coming to us,we need our army fully functional you understand don't you?Zero:So you know about Colonel?Fefnir:Yes! We have faced his army with the strongest troops we have but still he took them down like they were nothing.Leviathan:His army is no doudt the strongest and if we don't regenerate Master X then where doomed!Zero:So be it, just leave our base now or I'll change my mind.The Gardians then leave and Zero is left worryed about what Colonels army can do to the resistance and Ceil,he knew what he had to do before things would get messy.
Two days later Colonel sends a transmistion to the resistance,Colonel:Zero your time is up,I have a surprise for you think you can take on 5 of my Elites?Oh well your going to have to face them no matter what you think.hahaha Fare well Zero your time of Hero has ended.Axl: Don't worry Zero this is nothing lets go get them before it's too late.(Then there are four levels for you to beat and after you beat those levels a new level opens.(second to the last level)The Boss will be Vile from the X-series)
Vile:Hahaha Zero! Finally I'm hear to destroy the Legendary Reploid,to bad X isn't hear to back you up.Axl:Well I'm hear to see you die by the hands of two S Class Mavrick Hunters.Who are you to talk to me that why?Who cares lets get this over with.(You fight Vile until his health guadge is gone,but after you do Vile gets mad)Vile:I...won't....DIE!!(Vile transforms into his second form and you must defeat him to continue)to be continued...
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