In the future - the human race runs into a group of alien races that have been brought together (by force) to form the Covenant * under a religious leadership that is unspecified (btw - there are many of religious and mythological undertones to the story, including the word Covenant. I'll highlight them as I mention them with an * and provide descriptions at the end of this article) at this point. The Covenant wishes to defeat/destroy the human race, and potentially bring them into their Covenant as another slave race.
The humans have been battling the Covenant for decades, in what is considered ultimately to be a lost cause since the Covenant possesses greater and better technology than the humans do. They eventually get their hands on some Covenant technology, and they use it to develop a technologically advanced armor - the Mjolnir* - which they hope to use to create an army of super soldiers, the Spartans*, to fight the Covenant. The Master Chief - is one of these "super soldiers".
The Covenant launches their main assault on the human outpost named Reach - and the humans are prepared but ultimately defeated. You realize at the beginning of Halo that Reach has been destroyed - and with it a big chunk of the human defenses as well as all of the Spartans (excluding the MC).
To escape, Captain Keyes, who is heading up the MC's ship - escapes into Slipspace (kind of like using the "warp" drive) in any direction in an attempt to escape. They reappear at a distant location, with a strange ring shaped construct nearby that looks like a planet sized Halo*. Shortly thereafter, several Covenant ships enter out of Slipspace in pursuit of the Pillar of Autumn (Captain Keyes' ship). Captain Keyes has no choice but to land on Halo in an attempt to escape - and does so in a rough fashion, crash landing on the surface.
Really moving forward here - Master Chief begins to explore Halo in order to determine what it is and who created it. Obviously a very advanced race - perhaps they could be found and used to help in the battle of the Covenant. As the Master Chief explores Halo (with the Covenant in hot pursuit). As the MC escapes into a mysterious underground facility - he eventually runs into a shock - there is another alien race on Halo - a parasitic entity named the Flood* which feeds off the flesh of the living (human, covenant, whatever) and ultimately destroys them. Now the MC has a three way battle in which the Flood is attacking him and the Covenant, while the Covenant is battling the Flood while pursuing the MC.
The MC eventually runs into a floating robotic entity, named Guilty Spark 343 - that seeks him out and claims that he is the Chosen One. Guilty Spark compels the Master Chief to seek out the Key that is in this underground facility on Halo. The Master Chief, with his Artificial Intelligence system (Cortana) offline, decides to follow Guilty Spark in the hope that the key can be used to somehow turn Halo on - and use it as a weapon against the Covenant and the Flood. Guilty Spark leads the Master Chief against hordes of Covenant and Flood forces standing in his way through to the Library and they key. He then is asked to use the key to arm Halo. As he is about to do this - Cortana comes back online and screams at him to STOP!!! Apparently, it was Guilty Spark that caused her to go offline - but she was able to determine that Halo was developed by a now extinct race called the Forerunners as a weapon to destroy the Flood. But the weapon doesn't attack the Flood - it destroys their food by killing all living things within hundreds of light years around each Halo. There are numerous Halo's around the galaxy, with the objective being to turn them all on and destroy all living things thereby destroying the Flood. Guilty Spark acts surprised that the MC did not know this (since he is the Chosen One) but asks him to turn it on in any case. When the MC fails to do so - Guilty Spark launches the stations defenses against the MC - floating robots that were developed by the Forerunners to protect Halo. So now you have a four way battle - the robots developed by the Forerunners are after the MC - while also destroying Covenant and Flood forces that get in their way, the Flood which is attacking any living thin on the station, the Covenant which is being attacked by Flood and robots while they pursue the MC, and of course the MC.
To make a long story short - an incredible pursuit and escape plan begins in which the MC seeks a way off the station while also destroying it so that it's ultimate purpose is not realized. He succeeds in arming a self-destruct mechanism on Halo but must find a means of escape himself. In a brilliant ending sequence, the MC races in a warthog towards an escape ship as bodies and battles occur all around him. He gets to the ship and escapes as Halo explodes in the background.
They succeeded, but the MC notes to Cortana that this is not the end, just the beginning...
* Mjolnir: The legendary weapon of the Norse God Thor. "Mjolnir" means "lightning." Made by the Dwarves Brok and Eitri, it possessed magical qualities. It would magically return when thrown, and was used for healing and even resurrection.
* Spartan: This epic tale is set in Sparta in the fifth century B.C. when it was plagued by the Persian invaders. A sickly, crippled Spartan baby is left on a mountain to die, as was the custom, but he is rescued and raised as a shepherd. His healthy brother becomes a soldier. Eventually, the two find themselves fighting for Sparta at the Battle of Thermopylae--and they wonder why they seem so similar, and why they are so drawn to each other.....
* Halo: [n] an indication of radiant light drawn around the head of a saint.
*Flood: According to the Bible, the flood of Noah wiped out all flesh in which was the 'breath of life'. All animal and human life perished in that Divine judgment. The sole survivors were Noah and his immediate family, eight people in total, along with the creatures on board the Ark.
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